NCPI FHIR Implementation Guide v2 - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

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: NCPI Metadata slices - XML Representation

Draft as of 2024-11-25

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<CodeSystem xmlns="http://hl7.org/fhir">
  <id value="metadata-elements"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: CodeSystem metadata-elements</b></p><a name="metadata-elements"> </a><a name="hcmetadata-elements"> </a><a name="metadata-elements-en-US"> </a><p>This  code system <code>https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/metadata-elements</code> defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style="white-space:nowrap">AssayStrategy<a name="metadata-elements-AssayStrategy"> </a></td><td>Assay strategy</td></tr><tr><td style="white-space:nowrap">PlatformInstrument<a name="metadata-elements-PlatformInstrument"> </a></td><td>Platform instrument</td></tr><tr><td style="white-space:nowrap">RelatedSamples<a name="metadata-elements-RelatedSamples"> </a></td><td>Related samples</td></tr><tr><td style="white-space:nowrap">LibraryPrep<a name="metadata-elements-LibraryPrep"> </a></td><td>Library preparation</td></tr><tr><td style="white-space:nowrap">LibrarySelection<a name="metadata-elements-LibrarySelection"> </a></td><td>Library selection</td></tr><tr><td style="white-space:nowrap">Strandedness<a name="metadata-elements-Strandedness"> </a></td><td>Strandedness</td></tr><tr><td style="white-space:nowrap">TargetRegion<a name="metadata-elements-TargetRegion"> </a></td><td>Target region</td></tr><tr><td style="white-space:nowrap">ReferenceGenome<a name="metadata-elements-ReferenceGenome"> </a></td><td>Reference genome</td></tr><tr><td style="white-space:nowrap">IsPairedEnd<a name="metadata-elements-IsPairedEnd"> </a></td><td>Is paired end</td></tr><tr><td style="white-space:nowrap">WorkflowType<a name="metadata-elements-WorkflowType"> </a></td><td>Workflow type</td></tr><tr><td style="white-space:nowrap">WorkflowTool<a name="metadata-elements-WorkflowTool"> </a></td><td>Workflow tool</td></tr><tr><td style="white-space:nowrap">AdaptorTrimmed<a name="metadata-elements-AdaptorTrimmed"> </a></td><td>Adaptor trimmed</td></tr></table></div>
  </text>
  <url
       value="https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/metadata-elements"/>
  <version value="0.1.0"/>
  <name value="MetadataElements"/>
  <title value="NCPI Metadata slices"/>
  <status value="draft"/>
  <date value="2024-11-25T15:36:07+00:00"/>
  <publisher value="NCPI FHIR Working Group"/>
  <contact>
    <name value="NCPI FHIR Working Group"/>
    <telecom>
      <system value="url"/>
      <value value="http://example.org/example-publisher"/>
    </telecom>
    <telecom>
      <system value="email"/>
      <value value="ncpi-fhir-ig@googlegroups.com"/>
    </telecom>
  </contact>
  <description value="NCPI Metadata slices"/>
  <content value="complete"/>
  <count value="12"/>
  <concept>
    <code value="AssayStrategy"/>
    <display value="Assay strategy"/>
  </concept>
  <concept>
    <code value="PlatformInstrument"/>
    <display value="Platform instrument"/>
  </concept>
  <concept>
    <code value="RelatedSamples"/>
    <display value="Related samples"/>
  </concept>
  <concept>
    <code value="LibraryPrep"/>
    <display value="Library preparation"/>
  </concept>
  <concept>
    <code value="LibrarySelection"/>
    <display value="Library selection"/>
  </concept>
  <concept>
    <code value="Strandedness"/>
    <display value="Strandedness"/>
  </concept>
  <concept>
    <code value="TargetRegion"/>
    <display value="Target region"/>
  </concept>
  <concept>
    <code value="ReferenceGenome"/>
    <display value="Reference genome"/>
  </concept>
  <concept>
    <code value="IsPairedEnd"/>
    <display value="Is paired end"/>
  </concept>
  <concept>
    <code value="WorkflowType"/>
    <display value="Workflow type"/>
  </concept>
  <concept>
    <code value="WorkflowTool"/>
    <display value="Workflow tool"/>
  </concept>
  <concept>
    <code value="AdaptorTrimmed"/>
    <display value="Adaptor trimmed"/>
  </concept>
</CodeSystem>