NCPI FHIR Implementation Guide v2
0.1.0 - ci-build

NCPI FHIR Implementation Guide v2 - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: NCPI Metadata slices - JSON Representation

Draft as of 2024-11-25

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{
  "resourceType" : "CodeSystem",
  "id" : "metadata-elements",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem metadata-elements</b></p><a name=\"metadata-elements\"> </a><a name=\"hcmetadata-elements\"> </a><a name=\"metadata-elements-en-US\"> </a><p>This  code system <code>https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/metadata-elements</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">AssayStrategy<a name=\"metadata-elements-AssayStrategy\"> </a></td><td>Assay strategy</td></tr><tr><td style=\"white-space:nowrap\">PlatformInstrument<a name=\"metadata-elements-PlatformInstrument\"> </a></td><td>Platform instrument</td></tr><tr><td style=\"white-space:nowrap\">RelatedSamples<a name=\"metadata-elements-RelatedSamples\"> </a></td><td>Related samples</td></tr><tr><td style=\"white-space:nowrap\">LibraryPrep<a name=\"metadata-elements-LibraryPrep\"> </a></td><td>Library preparation</td></tr><tr><td style=\"white-space:nowrap\">LibrarySelection<a name=\"metadata-elements-LibrarySelection\"> </a></td><td>Library selection</td></tr><tr><td style=\"white-space:nowrap\">Strandedness<a name=\"metadata-elements-Strandedness\"> </a></td><td>Strandedness</td></tr><tr><td style=\"white-space:nowrap\">TargetRegion<a name=\"metadata-elements-TargetRegion\"> </a></td><td>Target region</td></tr><tr><td style=\"white-space:nowrap\">ReferenceGenome<a name=\"metadata-elements-ReferenceGenome\"> </a></td><td>Reference genome</td></tr><tr><td style=\"white-space:nowrap\">IsPairedEnd<a name=\"metadata-elements-IsPairedEnd\"> </a></td><td>Is paired end</td></tr><tr><td style=\"white-space:nowrap\">WorkflowType<a name=\"metadata-elements-WorkflowType\"> </a></td><td>Workflow type</td></tr><tr><td style=\"white-space:nowrap\">WorkflowTool<a name=\"metadata-elements-WorkflowTool\"> </a></td><td>Workflow tool</td></tr><tr><td style=\"white-space:nowrap\">AdaptorTrimmed<a name=\"metadata-elements-AdaptorTrimmed\"> </a></td><td>Adaptor trimmed</td></tr></table></div>"
  },
  "url" : "https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/metadata-elements",
  "version" : "0.1.0",
  "name" : "MetadataElements",
  "title" : "NCPI Metadata slices",
  "status" : "draft",
  "date" : "2024-11-25T15:36:07+00:00",
  "publisher" : "NCPI FHIR Working Group",
  "contact" : [
    {
      "name" : "NCPI FHIR Working Group",
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://example.org/example-publisher"
        },
        {
          "system" : "email",
          "value" : "ncpi-fhir-ig@googlegroups.com"
        }
      ]
    }
  ],
  "description" : "NCPI Metadata slices",
  "content" : "complete",
  "count" : 12,
  "concept" : [
    {
      "code" : "AssayStrategy",
      "display" : "Assay strategy"
    },
    {
      "code" : "PlatformInstrument",
      "display" : "Platform instrument"
    },
    {
      "code" : "RelatedSamples",
      "display" : "Related samples"
    },
    {
      "code" : "LibraryPrep",
      "display" : "Library preparation"
    },
    {
      "code" : "LibrarySelection",
      "display" : "Library selection"
    },
    {
      "code" : "Strandedness",
      "display" : "Strandedness"
    },
    {
      "code" : "TargetRegion",
      "display" : "Target region"
    },
    {
      "code" : "ReferenceGenome",
      "display" : "Reference genome"
    },
    {
      "code" : "IsPairedEnd",
      "display" : "Is paired end"
    },
    {
      "code" : "WorkflowType",
      "display" : "Workflow type"
    },
    {
      "code" : "WorkflowTool",
      "display" : "Workflow tool"
    },
    {
      "code" : "AdaptorTrimmed",
      "display" : "Adaptor trimmed"
    }
  ]
}