NCPI-FHIR-IMPLEMENTATION-GUIDE\Concept Map showing representing harmonization mappings - XML Representation

NCPI FHIR Implementation Guide
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: Concept Map showing representing harmonization mappings - XML Representation

Active as of 2022-12-09


<ConceptMap xmlns="http://hl7.org/fhir">
  <id value="example-study-data-dictionary-conceptmap-1"/>
  <meta>
    <profile
             value="https://nih-ncpi.github.io/ncpi-fhir-ig/StructureDefinition/study-data-dictionary-harmony"/>
  </meta>
  <text>
    <status value="extensions"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><h2>null (http://example.org/my-dataset/fhir/conceptmap/data-to-public)</h2><p>Mapping from <a href="ValueSet-datatable-valueset-1.html">https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-valueset-1</a> to <a href="ValueSet-datatable-mappings-valueset-1.html">https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1</a></p><p>ACTIVE. Published on 2022-12-09 17:30:30+0000 by NCPI FHIR Working Group (NCPI FHIR Working Group: <a href="https://github.com/nih-ncpi">https://github.com/nih-ncpi</a>, Meen Chul Kim: <a href="mailto:meenchul@d3b.center">meenchul@d3b.center</a>). </p><br/><p><b>Group 1</b>Mapping from <a href="CodeSystem-example-study-data-dictionary-datatable-codesystem-1.html">Datatable CodeSystem (lists all variables)</a> to <code>https://uts.nlm.nih.gov/uts/umls</code></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>subjectid (Subject's Unique Identifier)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>C2348584 (Subject Unique Identifier)</td></tr><tr><td>gender</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>C0079399 (Gender)</td></tr><tr><td>age_at_enrollment (Subject's Age at Enrollment in days)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>C168843 (Age in Days at Enrollment)</td></tr><tr><td>bmi (Subject's BMI, Measured at Enrollment)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#wider" title="wider">maps to wider concept</a></td><td>C1305855 (Body mass index)</td></tr><tr><td>status (Subject's status (Case or Control))</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>C0872128 (case control)</td></tr></table><hr/><p><b>Group 2</b>Mapping from <a href="CodeSystem-example-study-data-dictionary-datatable-codesystem-1.html">Datatable CodeSystem (lists all variables)</a> to <a href="http://terminology.hl7.org/5.0.0/CodeSystem-v3-loinc.html">Logical Observation Identifiers, Names and Codes (LOINC)</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>bmi (Subject's BMI, Measured at Enrollment)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#wider" title="wider">maps to wider concept</a></td><td>LP35925-4 (Body mass index (BMI))</td></tr></table><hr/><p><b>Group 3</b>Mapping from <a href="CodeSystem-example-study-data-dictionary-datatable-codesystem-1.html">Datatable CodeSystem (lists all variables)</a> to <a href="CodeSystem-hpo.html">Human Phenotype Ontology</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>status (Subject's status (Case or Control))</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>HP:0010772 (Anomalous pulmonary venous return)</td></tr></table><hr/><p><b>Group 4</b>Mapping from <a href="CodeSystem-example-study-data-dictionary-datatable-codesystem-1.html">Datatable CodeSystem (lists all variables)</a> to <a href="CodeSystem-mondo.html">Mondo Disease Ontology</a></p><table class="grid"><tr><td colspan="2"><b>Source Concept Details</b></td><td><b>Relationship</b></td><td colspan="2"><b>Target Concept Details</b></td></tr><tr><td colspan="2"><b>Codes</b> from <a href="CodeSystem-example-study-data-dictionary-datatable-codesystem-1.html" title="https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-datatable-codesystem-1">Datatable CodeSystem (lists all variables)</a></td><td/><td colspan="2"><b>Codes</b> from <a href="CodeSystem-mondo.html" title="http://purl.obolibrary.org/obo/mondo.owl">Mondo Disease Ontology</a></td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">status</td><td style="border-left-width: 0px; border-bottom-style: none">Subject's status (Case or Control)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">MONDO:0017705</td><td style="border-left-width: 0px">congenital pulmonary venous return anomaly</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">MONDO:0007130</td><td style="border-left-width: 0px">congenital total pulmonary venous return anomaly</td></tr></table></div>
  </text>
  <url value="http://example.org/my-dataset/fhir/conceptmap/data-to-public"/>
  <version value="0.2.0"/>
  <status value="active"/>
  <date value="2022-12-09T17:30:30+00:00"/>
  <publisher value="NCPI FHIR Working Group"/>
  <contact>
    <name value="NCPI FHIR Working Group"/>
    <telecom>
      <system value="url"/>
      <value value="https://github.com/nih-ncpi"/>
    </telecom>
  </contact>
  <contact>
    <name value="Meen Chul Kim"/>
    <telecom>
      <system value="email"/>
      <value value="meenchul@d3b.center"/>
      <use value="work"/>
    </telecom>
  </contact>
  <purpose
           value="Represent transformations to public codes applied during data ingestion"/>
  <sourceUri
             value="https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-valueset-1"/>
  <targetUri
             value="https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1"/>
  <group>
    <source
            value="https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-datatable-codesystem-1"/>
    <target value="https://uts.nlm.nih.gov/uts/umls"/>
    <element>
      <code value="subjectid"/>
      <display value="Subject's Unique Identifier"/>
      <target>
        <code value="C2348584"/>
        <display value="Subject Unique Identifier"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
    <element>
      <code value="gender"/>
      <display value="Gender"/>
      <target>
        <code value="C0079399"/>
        <display value="Gender"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
    <element>
      <code value="age_at_enrollment"/>
      <display value="Subject's Age at Enrollment in days"/>
      <target>
        <code value="C168843"/>
        <display value="Age in Days at Enrollment"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
    <element>
      <code value="bmi"/>
      <display value="Subject's BMI, Measured at Enrollment"/>
      <target>
        <code value="C1305855"/>
        <display value="Body mass index"/>
        <equivalence value="wider"/>
      </target>
    </element>
    <element>
      <code value="status"/>
      <display value="Subject's status (Case or Control)"/>
      <target>
        <code value="C0872128"/>
        <display value="case control"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
  </group>
  <group>
    <source
            value="https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-datatable-codesystem-1"/>
    <target value="http://loinc.org"/>
    <element>
      <code value="bmi"/>
      <display value="Subject's BMI, Measured at Enrollment"/>
      <target>
        <code value="LP35925-4"/>
        <display value="Body mass index (BMI)"/>
        <equivalence value="wider"/>
      </target>
    </element>
  </group>
  <group>
    <source
            value="https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-datatable-codesystem-1"/>
    <target value="http://purl.obolibrary.org/obo/hp.owl"/>
    <element>
      <code value="status"/>
      <display value="Subject's status (Case or Control)"/>
      <target>
        <code value="HP:0010772"/>
        <display value="Anomalous pulmonary venous return"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
  </group>
  <group>
    <source
            value="https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-datatable-codesystem-1"/>
    <target value="http://purl.obolibrary.org/obo/mondo.owl"/>
    <element>
      <code value="status"/>
      <display value="Subject's status (Case or Control)"/>
      <target>
        <code value="MONDO:0017705"/>
        <display value="congenital pulmonary venous return anomaly"/>
        <equivalence value="equivalent"/>
      </target>
      <target>
        <code value="MONDO:0007130"/>
        <display value="congenital total pulmonary venous return anomaly"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
  </group>
</ConceptMap>
IG © 2021+ NCPI FHIR Working Group. Package NCPI-FHIR-Implementation-Guide#0.2.0 based on FHIR 4.0.1. Generated 2022-12-09
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