NCPI-FHIR-IMPLEMENTATION-GUIDE\Concept Map showing representing harmonization mappings - TTL Representation

NCPI FHIR Implementation Guide
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: Concept Map showing representing harmonization mappings - TTL Representation

Active as of 2022-12-09

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:ConceptMap;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "example-study-data-dictionary-conceptmap-1"]; # 
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "https://nih-ncpi.github.io/ncpi-fhir-ig/StructureDefinition/study-data-dictionary-harmony";
       fhir:index 0;
       fhir:link <https://nih-ncpi.github.io/ncpi-fhir-ig/StructureDefinition/study-data-dictionary-harmony>     ]
  ]; # 
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "extensions" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>null (http://example.org/my-dataset/fhir/conceptmap/data-to-public)</h2><p>Mapping from <a href=\"ValueSet-datatable-valueset-1.html\">https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-valueset-1</a> to <a href=\"ValueSet-datatable-mappings-valueset-1.html\">https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1</a></p><p>ACTIVE. Published on 2022-12-09 17:30:30+0000 by NCPI FHIR Working Group (NCPI FHIR Working Group: <a href=\"https://github.com/nih-ncpi\">https://github.com/nih-ncpi</a>, Meen Chul Kim: <a href=\"mailto:meenchul@d3b.center\">meenchul@d3b.center</a>). </p><br/><p><b>Group 1</b>Mapping from <a href=\"CodeSystem-example-study-data-dictionary-datatable-codesystem-1.html\">Datatable CodeSystem (lists all variables)</a> to <code>https://uts.nlm.nih.gov/uts/umls</code></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>subjectid (Subject's Unique Identifier)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>C2348584 (Subject Unique Identifier)</td></tr><tr><td>gender</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>C0079399 (Gender)</td></tr><tr><td>age_at_enrollment (Subject's Age at Enrollment in days)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>C168843 (Age in Days at Enrollment)</td></tr><tr><td>bmi (Subject's BMI, Measured at Enrollment)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#wider\" title=\"wider\">maps to wider concept</a></td><td>C1305855 (Body mass index)</td></tr><tr><td>status (Subject's status (Case or Control))</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>C0872128 (case control)</td></tr></table><hr/><p><b>Group 2</b>Mapping from <a href=\"CodeSystem-example-study-data-dictionary-datatable-codesystem-1.html\">Datatable CodeSystem (lists all variables)</a> to <a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v3-loinc.html\">Logical Observation Identifiers, Names and Codes (LOINC)</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>bmi (Subject's BMI, Measured at Enrollment)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#wider\" title=\"wider\">maps to wider concept</a></td><td>LP35925-4 (Body mass index (BMI))</td></tr></table><hr/><p><b>Group 3</b>Mapping from <a href=\"CodeSystem-example-study-data-dictionary-datatable-codesystem-1.html\">Datatable CodeSystem (lists all variables)</a> to <a href=\"CodeSystem-hpo.html\">Human Phenotype Ontology</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>status (Subject's status (Case or Control))</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>HP:0010772 (Anomalous pulmonary venous return)</td></tr></table><hr/><p><b>Group 4</b>Mapping from <a href=\"CodeSystem-example-study-data-dictionary-datatable-codesystem-1.html\">Datatable CodeSystem (lists all variables)</a> to <a href=\"CodeSystem-mondo.html\">Mondo Disease Ontology</a></p><table class=\"grid\"><tr><td colspan=\"2\"><b>Source Concept Details</b></td><td><b>Relationship</b></td><td colspan=\"2\"><b>Target Concept Details</b></td></tr><tr><td colspan=\"2\"><b>Codes</b> from <a href=\"CodeSystem-example-study-data-dictionary-datatable-codesystem-1.html\" title=\"https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-datatable-codesystem-1\">Datatable CodeSystem (lists all variables)</a></td><td/><td colspan=\"2\"><b>Codes</b> from <a href=\"CodeSystem-mondo.html\" title=\"http://purl.obolibrary.org/obo/mondo.owl\">Mondo Disease Ontology</a></td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">status</td><td style=\"border-left-width: 0px; border-bottom-style: none\">Subject's status (Case or Control)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">MONDO:0017705</td><td style=\"border-left-width: 0px\">congenital pulmonary venous return anomaly</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">MONDO:0007130</td><td style=\"border-left-width: 0px\">congenital total pulmonary venous return anomaly</td></tr></table></div>"
  ]; # 
  fhir:ConceptMap.url [ fhir:value "http://example.org/my-dataset/fhir/conceptmap/data-to-public"]; # 
  fhir:ConceptMap.version [ fhir:value "0.2.0"]; # 
  fhir:ConceptMap.status [ fhir:value "active"]; # 
  fhir:ConceptMap.date [ fhir:value "2022-12-09T17:30:30+00:00"^^xsd:dateTime]; # 
  fhir:ConceptMap.publisher [ fhir:value "NCPI FHIR Working Group"]; # 
  fhir:ConceptMap.contact [
     fhir:index 0;
     fhir:ContactDetail.name [ fhir:value "NCPI FHIR Working Group" ];
     fhir:ContactDetail.telecom [
       fhir:index 0;
       fhir:ContactPoint.system [ fhir:value "url" ];
       fhir:ContactPoint.value [ fhir:value "https://github.com/nih-ncpi" ]     ]
  ], [
     fhir:index 1;
     fhir:ContactDetail.name [ fhir:value "Meen Chul Kim" ];
     fhir:ContactDetail.telecom [
       fhir:index 0;
       fhir:ContactPoint.system [ fhir:value "email" ];
       fhir:ContactPoint.value [ fhir:value "meenchul@d3b.center" ];
       fhir:ContactPoint.use [ fhir:value "work" ]     ]
  ]; # 
  fhir:ConceptMap.purpose [ fhir:value "Represent transformations to public codes applied during data ingestion"]; # 
  fhir:ConceptMap.sourceUri [ fhir:value "https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-valueset-1"]; # 
  fhir:ConceptMap.targetUri [ fhir:value "https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1"]; # 
  fhir:ConceptMap.group [
     fhir:index 0;
     fhir:ConceptMap.group.source [ fhir:value "https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-datatable-codesystem-1" ];
     fhir:ConceptMap.group.target [ fhir:value "https://uts.nlm.nih.gov/uts/umls" ];
     fhir:ConceptMap.group.element [
       fhir:index 0;
       fhir:ConceptMap.group.element.code [ fhir:value "subjectid" ];
       fhir:ConceptMap.group.element.display [ fhir:value "Subject's Unique Identifier" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "C2348584" ];
         fhir:ConceptMap.group.element.target.display [ fhir:value "Subject Unique Identifier" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ]       ]     ], [
       fhir:index 1;
       fhir:ConceptMap.group.element.code [ fhir:value "gender" ];
       fhir:ConceptMap.group.element.display [ fhir:value "Gender" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "C0079399" ];
         fhir:ConceptMap.group.element.target.display [ fhir:value "Gender" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ]       ]     ], [
       fhir:index 2;
       fhir:ConceptMap.group.element.code [ fhir:value "age_at_enrollment" ];
       fhir:ConceptMap.group.element.display [ fhir:value "Subject's Age at Enrollment in days" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "C168843" ];
         fhir:ConceptMap.group.element.target.display [ fhir:value "Age in Days at Enrollment" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ]       ]     ], [
       fhir:index 3;
       fhir:ConceptMap.group.element.code [ fhir:value "bmi" ];
       fhir:ConceptMap.group.element.display [ fhir:value "Subject's BMI, Measured at Enrollment" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "C1305855" ];
         fhir:ConceptMap.group.element.target.display [ fhir:value "Body mass index" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "wider" ]       ]     ], [
       fhir:index 4;
       fhir:ConceptMap.group.element.code [ fhir:value "status" ];
       fhir:ConceptMap.group.element.display [ fhir:value "Subject's status (Case or Control)" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "C0872128" ];
         fhir:ConceptMap.group.element.target.display [ fhir:value "case control" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ]       ]     ]
  ], [
     fhir:index 1;
     fhir:ConceptMap.group.source [ fhir:value "https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-datatable-codesystem-1" ];
     fhir:ConceptMap.group.target [ fhir:value "http://loinc.org" ];
     fhir:ConceptMap.group.element [
       fhir:index 0;
       fhir:ConceptMap.group.element.code [ fhir:value "bmi" ];
       fhir:ConceptMap.group.element.display [ fhir:value "Subject's BMI, Measured at Enrollment" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "LP35925-4" ];
         fhir:ConceptMap.group.element.target.display [ fhir:value "Body mass index (BMI)" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "wider" ]       ]     ]
  ], [
     fhir:index 2;
     fhir:ConceptMap.group.source [ fhir:value "https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-datatable-codesystem-1" ];
     fhir:ConceptMap.group.target [ fhir:value "http://purl.obolibrary.org/obo/hp.owl" ];
     fhir:ConceptMap.group.element [
       fhir:index 0;
       fhir:ConceptMap.group.element.code [ fhir:value "status" ];
       fhir:ConceptMap.group.element.display [ fhir:value "Subject's status (Case or Control)" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "HP:0010772" ];
         fhir:ConceptMap.group.element.target.display [ fhir:value "Anomalous pulmonary venous return" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ]       ]     ]
  ], [
     fhir:index 3;
     fhir:ConceptMap.group.source [ fhir:value "https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-datatable-codesystem-1" ];
     fhir:ConceptMap.group.target [ fhir:value "http://purl.obolibrary.org/obo/mondo.owl" ];
     fhir:ConceptMap.group.element [
       fhir:index 0;
       fhir:ConceptMap.group.element.code [ fhir:value "status" ];
       fhir:ConceptMap.group.element.display [ fhir:value "Subject's status (Case or Control)" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "MONDO:0017705" ];
         fhir:ConceptMap.group.element.target.display [ fhir:value "congenital pulmonary venous return anomaly" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ]       ], [
         fhir:index 1;
         fhir:ConceptMap.group.element.target.code [ fhir:value "MONDO:0007130" ];
         fhir:ConceptMap.group.element.target.display [ fhir:value "congenital total pulmonary venous return anomaly" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ]       ]     ]
  ]. # 

# - ontology header ------------------------------------------------------------

 a owl:Ontology;
  owl:imports fhir:fhir.ttl.
IG © 2021+ NCPI FHIR Working Group. Package NCPI-FHIR-Implementation-Guide#0.2.0 based on FHIR 4.0.1. Generated 2022-12-09
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