NCPI FHIR Implementation Guide
0.2.0 - ci-build
NCPI FHIR Implementation Guide - Local Development build (v0.2.0). See the Directory of published versions
| Active as of 2022-12-09 |
{
"resourceType" : "ConceptMap",
"id" : "example-study-data-dictionary-conceptmap-1",
"meta" : {
"profile" : [
"https://nih-ncpi.github.io/ncpi-fhir-ig/StructureDefinition/study-data-dictionary-harmony"
]
},
"text" : {
"status" : "extensions",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>null (http://example.org/my-dataset/fhir/conceptmap/data-to-public)</h2><p>Mapping from <a href=\"ValueSet-datatable-valueset-1.html\">https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-valueset-1</a> to <a href=\"ValueSet-datatable-mappings-valueset-1.html\">https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1</a></p><p>ACTIVE. Published on 2022-12-09 17:30:30+0000 by NCPI FHIR Working Group (NCPI FHIR Working Group: <a href=\"https://github.com/nih-ncpi\">https://github.com/nih-ncpi</a>, Meen Chul Kim: <a href=\"mailto:meenchul@d3b.center\">meenchul@d3b.center</a>). </p><br/><p><b>Group 1</b>Mapping from <a href=\"CodeSystem-example-study-data-dictionary-datatable-codesystem-1.html\">Datatable CodeSystem (lists all variables)</a> to <code>https://uts.nlm.nih.gov/uts/umls</code></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>subjectid (Subject's Unique Identifier)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>C2348584 (Subject Unique Identifier)</td></tr><tr><td>gender</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>C0079399 (Gender)</td></tr><tr><td>age_at_enrollment (Subject's Age at Enrollment in days)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>C168843 (Age in Days at Enrollment)</td></tr><tr><td>bmi (Subject's BMI, Measured at Enrollment)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#wider\" title=\"wider\">maps to wider concept</a></td><td>C1305855 (Body mass index)</td></tr><tr><td>status (Subject's status (Case or Control))</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>C0872128 (case control)</td></tr></table><hr/><p><b>Group 2</b>Mapping from <a href=\"CodeSystem-example-study-data-dictionary-datatable-codesystem-1.html\">Datatable CodeSystem (lists all variables)</a> to <a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v3-loinc.html\">Logical Observation Identifiers, Names and Codes (LOINC)</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>bmi (Subject's BMI, Measured at Enrollment)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#wider\" title=\"wider\">maps to wider concept</a></td><td>LP35925-4 (Body mass index (BMI))</td></tr></table><hr/><p><b>Group 3</b>Mapping from <a href=\"CodeSystem-example-study-data-dictionary-datatable-codesystem-1.html\">Datatable CodeSystem (lists all variables)</a> to <a href=\"CodeSystem-hpo.html\">Human Phenotype Ontology</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>status (Subject's status (Case or Control))</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>HP:0010772 (Anomalous pulmonary venous return)</td></tr></table><hr/><p><b>Group 4</b>Mapping from <a href=\"CodeSystem-example-study-data-dictionary-datatable-codesystem-1.html\">Datatable CodeSystem (lists all variables)</a> to <a href=\"CodeSystem-mondo.html\">Mondo Disease Ontology</a></p><table class=\"grid\"><tr><td colspan=\"2\"><b>Source Concept Details</b></td><td><b>Relationship</b></td><td colspan=\"2\"><b>Target Concept Details</b></td></tr><tr><td colspan=\"2\"><b>Codes</b> from <a href=\"CodeSystem-example-study-data-dictionary-datatable-codesystem-1.html\" title=\"https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-datatable-codesystem-1\">Datatable CodeSystem (lists all variables)</a></td><td/><td colspan=\"2\"><b>Codes</b> from <a href=\"CodeSystem-mondo.html\" title=\"http://purl.obolibrary.org/obo/mondo.owl\">Mondo Disease Ontology</a></td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">status</td><td style=\"border-left-width: 0px; border-bottom-style: none\">Subject's status (Case or Control)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">MONDO:0017705</td><td style=\"border-left-width: 0px\">congenital pulmonary venous return anomaly</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">MONDO:0007130</td><td style=\"border-left-width: 0px\">congenital total pulmonary venous return anomaly</td></tr></table></div>"
},
"url" : "http://example.org/my-dataset/fhir/conceptmap/data-to-public",
"version" : "0.2.0",
"status" : "active",
"date" : "2022-12-09T17:30:30+00:00",
"publisher" : "NCPI FHIR Working Group",
"contact" : [
{
"name" : "NCPI FHIR Working Group",
"telecom" : [
{
"system" : "url",
"value" : "https://github.com/nih-ncpi"
}
]
},
{
"name" : "Meen Chul Kim",
"telecom" : [
{
"system" : "email",
"value" : "meenchul@d3b.center",
"use" : "work"
}
]
}
],
"purpose" : "Represent transformations to public codes applied during data ingestion",
"sourceUri" : "https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-valueset-1",
"targetUri" : "https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1",
"group" : [
{
"source" : "https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-datatable-codesystem-1",
"target" : "https://uts.nlm.nih.gov/uts/umls",
"element" : [
{
"code" : "subjectid",
"display" : "Subject's Unique Identifier",
"target" : [
{
"code" : "C2348584",
"display" : "Subject Unique Identifier",
"equivalence" : "equivalent"
}
]
},
{
"code" : "gender",
"display" : "Gender",
"target" : [
{
"code" : "C0079399",
"display" : "Gender",
"equivalence" : "equivalent"
}
]
},
{
"code" : "age_at_enrollment",
"display" : "Subject's Age at Enrollment in days",
"target" : [
{
"code" : "C168843",
"display" : "Age in Days at Enrollment",
"equivalence" : "equivalent"
}
]
},
{
"code" : "bmi",
"display" : "Subject's BMI, Measured at Enrollment",
"target" : [
{
"code" : "C1305855",
"display" : "Body mass index",
"equivalence" : "wider"
}
]
},
{
"code" : "status",
"display" : "Subject's status (Case or Control)",
"target" : [
{
"code" : "C0872128",
"display" : "case control",
"equivalence" : "equivalent"
}
]
}
]
},
{
"source" : "https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-datatable-codesystem-1",
"target" : "http://loinc.org",
"element" : [
{
"code" : "bmi",
"display" : "Subject's BMI, Measured at Enrollment",
"target" : [
{
"code" : "LP35925-4",
"display" : "Body mass index (BMI)",
"equivalence" : "wider"
}
]
}
]
},
{
"source" : "https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-datatable-codesystem-1",
"target" : "http://purl.obolibrary.org/obo/hp.owl",
"element" : [
{
"code" : "status",
"display" : "Subject's status (Case or Control)",
"target" : [
{
"code" : "HP:0010772",
"display" : "Anomalous pulmonary venous return",
"equivalence" : "equivalent"
}
]
}
]
},
{
"source" : "https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-datatable-codesystem-1",
"target" : "http://purl.obolibrary.org/obo/mondo.owl",
"element" : [
{
"code" : "status",
"display" : "Subject's status (Case or Control)",
"target" : [
{
"code" : "MONDO:0017705",
"display" : "congenital pulmonary venous return anomaly",
"equivalence" : "equivalent"
},
{
"code" : "MONDO:0007130",
"display" : "congenital total pulmonary venous return anomaly",
"equivalence" : "equivalent"
}
]
}
]
}
]
}
IG © 2021+ NCPI FHIR Working Group. Package NCPI-FHIR-Implementation-Guide#0.2.0 based on FHIR 4.0.1. Generated 2022-12-09
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