NCPI FHIR Implementation Guide v2
0.1.0 - ci-build

NCPI FHIR Implementation Guide v2 - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

Resource Profile: Linkage for related samples

Official URL: https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-specimen-NcpiSpecimenCollection Version: 0.1.0
Draft as of 2024-11-25 Computable Name: NcpiSpecimenCollection

Linkage for related samples

Usage:

  • This Resource Profile is not used by any profiles in this Implementation Guide

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

This structure is derived from List

NameFlagsCard.TypeDescription & Constraintsdoco
.. List 0..* List A list is a curated collection of resources
... subject 0..1 Reference(Patient | Group | Device | Location) Reference to any subjects or other samples related to a subject

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraintsdoco
.. List C 0..* List A list is a curated collection of resources
lst-1: A list can only have an emptyReason if it is empty
lst-2: The deleted flag can only be used if the mode of the list is "changes"
lst-3: An entry date can only be used if the mode of the list is "working"
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... status ?!Σ 1..1 code current | retired | entered-in-error
Binding: ListStatus (required): The current state of the list.

... subject Σ 0..1 Reference(Patient | Group | Device | Location) Reference to any subjects or other samples related to a subject

doco Documentation for this format

Terminology Bindings

PathConformanceValueSetURI
List.statusrequiredListStatus
http://hl7.org/fhir/ValueSet/list-status|4.3.0
from the FHIR Standard
List.moderequiredListMode
http://hl7.org/fhir/ValueSet/list-mode|4.3.0
from the FHIR Standard

Constraints

IdGradePath(s)DetailsRequirements
dom-2errorListIf the resource is contained in another resource, it SHALL NOT contain nested Resources
: contained.contained.empty()
dom-3errorListIf the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource
: contained.where(((id.exists() and ('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url)))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(uri) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4errorListIf a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated
: contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5errorListIf a resource is contained in another resource, it SHALL NOT have a security label
: contained.meta.security.empty()
dom-6best practiceListA resource should have narrative for robust management
: text.`div`.exists()
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()
lst-1errorListA list can only have an emptyReason if it is empty
: emptyReason.empty() or entry.empty()
lst-2errorListThe deleted flag can only be used if the mode of the list is "changes"
: mode = 'changes' or entry.deleted.empty()
lst-3errorListAn entry date can only be used if the mode of the list is "working"
: mode = 'working' or entry.date.empty()
NameFlagsCard.TypeDescription & Constraintsdoco
.. List C 0..* List A list is a curated collection of resources
lst-1: A list can only have an emptyReason if it is empty
lst-2: The deleted flag can only be used if the mode of the list is "changes"
lst-3: An entry date can only be used if the mode of the list is "working"
... id Σ 0..1 id Logical id of this artifact
... meta Σ 0..1 Meta Metadata about the resource
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... text 0..1 Narrative Text summary of the resource, for human interpretation
... contained 0..* Resource Contained, inline Resources
dom-r4b: Containing new R4B resources within R4 resources may cause interoperability issues if instances are shared with R4 systems
... extension 0..* Extension Additional content defined by implementations
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... identifier 0..* Identifier Business identifier
... status ?!Σ 1..1 code current | retired | entered-in-error
Binding: ListStatus (required): The current state of the list.

... mode ?!Σ 1..1 code working | snapshot | changes
Binding: ListMode (required): The processing mode that applies to this list.

... title Σ 0..1 string Descriptive name for the list
Example General: Dr. Jane's Patients
... code Σ 0..1 CodeableConcept What the purpose of this list is
Binding: ExampleUseCodesForList (example): What the purpose of a list is.

... subject Σ 0..1 Reference(Patient | Group | Device | Location) Reference to any subjects or other samples related to a subject
... encounter 0..1 Reference(Encounter) Context in which list created
... date Σ 0..1 dateTime When the list was prepared
... source Σ 0..1 Reference(Practitioner | PractitionerRole | Patient | Device) Who and/or what defined the list contents (aka Author)
... orderedBy 0..1 CodeableConcept What order the list has
Binding: ListOrderCodes (preferred): What order applies to the items in a list.

... note 0..* Annotation Comments about the list
... entry C 0..* BackboneElement Entries in the list
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... flag 0..1 CodeableConcept Status/Workflow information about this item
Binding: PatientMedicineChangeTypes (example): Codes that provide further information about the reason and meaning of the item in the list.

.... deleted ?!C 0..1 boolean If this item is actually marked as deleted
.... date 0..1 dateTime When item added to list
.... item 1..1 Reference(Resource) Actual entry
... emptyReason C 0..1 CodeableConcept Why list is empty
Binding: ListEmptyReasons (preferred): If a list is empty, why it is empty.


doco Documentation for this format

Terminology Bindings

PathConformanceValueSetURI
List.languagepreferredCommonLanguages
Additional Bindings Purpose
AllLanguages Max Binding
http://hl7.org/fhir/ValueSet/languages
from the FHIR Standard
List.statusrequiredListStatus
http://hl7.org/fhir/ValueSet/list-status|4.3.0
from the FHIR Standard
List.moderequiredListMode
http://hl7.org/fhir/ValueSet/list-mode|4.3.0
from the FHIR Standard
List.codeexampleExampleUseCodesForList
http://hl7.org/fhir/ValueSet/list-example-codes
from the FHIR Standard
List.orderedBypreferredListOrderCodes
http://hl7.org/fhir/ValueSet/list-order
from the FHIR Standard
List.entry.flagexamplePatientMedicineChangeTypes
http://hl7.org/fhir/ValueSet/list-item-flag
from the FHIR Standard
List.emptyReasonpreferredListEmptyReasons
http://hl7.org/fhir/ValueSet/list-empty-reason
from the FHIR Standard

Constraints

IdGradePath(s)DetailsRequirements
dom-2errorListIf the resource is contained in another resource, it SHALL NOT contain nested Resources
: contained.contained.empty()
dom-3errorListIf the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource
: contained.where(((id.exists() and ('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url)))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(uri) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4errorListIf a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated
: contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5errorListIf a resource is contained in another resource, it SHALL NOT have a security label
: contained.meta.security.empty()
dom-6best practiceListA resource should have narrative for robust management
: text.`div`.exists()
dom-r4bwarningList.containedContaining new R4B resources within R4 resources may cause interoperability issues if instances are shared with R4 systems
: ($this is Citation or $this is Evidence or $this is EvidenceReport or $this is EvidenceVariable or $this is MedicinalProductDefinition or $this is PackagedProductDefinition or $this is AdministrableProductDefinition or $this is Ingredient or $this is ClinicalUseDefinition or $this is RegulatedAuthorization or $this is SubstanceDefinition or $this is SubscriptionStatus or $this is SubscriptionTopic) implies (%resource is Citation or %resource is Evidence or %resource is EvidenceReport or %resource is EvidenceVariable or %resource is MedicinalProductDefinition or %resource is PackagedProductDefinition or %resource is AdministrableProductDefinition or %resource is Ingredient or %resource is ClinicalUseDefinition or %resource is RegulatedAuthorization or %resource is SubstanceDefinition or %resource is SubscriptionStatus or %resource is SubscriptionTopic)
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()
lst-1errorListA list can only have an emptyReason if it is empty
: emptyReason.empty() or entry.empty()
lst-2errorListThe deleted flag can only be used if the mode of the list is "changes"
: mode = 'changes' or entry.deleted.empty()
lst-3errorListAn entry date can only be used if the mode of the list is "working"
: mode = 'working' or entry.date.empty()

This structure is derived from List

Summary

Differential View

This structure is derived from List

NameFlagsCard.TypeDescription & Constraintsdoco
.. List 0..* List A list is a curated collection of resources
... subject 0..1 Reference(Patient | Group | Device | Location) Reference to any subjects or other samples related to a subject

doco Documentation for this format

Key Elements View

NameFlagsCard.TypeDescription & Constraintsdoco
.. List C 0..* List A list is a curated collection of resources
lst-1: A list can only have an emptyReason if it is empty
lst-2: The deleted flag can only be used if the mode of the list is "changes"
lst-3: An entry date can only be used if the mode of the list is "working"
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... status ?!Σ 1..1 code current | retired | entered-in-error
Binding: ListStatus (required): The current state of the list.

... subject Σ 0..1 Reference(Patient | Group | Device | Location) Reference to any subjects or other samples related to a subject

doco Documentation for this format

Terminology Bindings

PathConformanceValueSetURI
List.statusrequiredListStatus
http://hl7.org/fhir/ValueSet/list-status|4.3.0
from the FHIR Standard
List.moderequiredListMode
http://hl7.org/fhir/ValueSet/list-mode|4.3.0
from the FHIR Standard

Constraints

IdGradePath(s)DetailsRequirements
dom-2errorListIf the resource is contained in another resource, it SHALL NOT contain nested Resources
: contained.contained.empty()
dom-3errorListIf the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource
: contained.where(((id.exists() and ('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url)))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(uri) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4errorListIf a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated
: contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5errorListIf a resource is contained in another resource, it SHALL NOT have a security label
: contained.meta.security.empty()
dom-6best practiceListA resource should have narrative for robust management
: text.`div`.exists()
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()
lst-1errorListA list can only have an emptyReason if it is empty
: emptyReason.empty() or entry.empty()
lst-2errorListThe deleted flag can only be used if the mode of the list is "changes"
: mode = 'changes' or entry.deleted.empty()
lst-3errorListAn entry date can only be used if the mode of the list is "working"
: mode = 'working' or entry.date.empty()

Snapshot View

NameFlagsCard.TypeDescription & Constraintsdoco
.. List C 0..* List A list is a curated collection of resources
lst-1: A list can only have an emptyReason if it is empty
lst-2: The deleted flag can only be used if the mode of the list is "changes"
lst-3: An entry date can only be used if the mode of the list is "working"
... id Σ 0..1 id Logical id of this artifact
... meta Σ 0..1 Meta Metadata about the resource
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... text 0..1 Narrative Text summary of the resource, for human interpretation
... contained 0..* Resource Contained, inline Resources
dom-r4b: Containing new R4B resources within R4 resources may cause interoperability issues if instances are shared with R4 systems
... extension 0..* Extension Additional content defined by implementations
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... identifier 0..* Identifier Business identifier
... status ?!Σ 1..1 code current | retired | entered-in-error
Binding: ListStatus (required): The current state of the list.

... mode ?!Σ 1..1 code working | snapshot | changes
Binding: ListMode (required): The processing mode that applies to this list.

... title Σ 0..1 string Descriptive name for the list
Example General: Dr. Jane's Patients
... code Σ 0..1 CodeableConcept What the purpose of this list is
Binding: ExampleUseCodesForList (example): What the purpose of a list is.

... subject Σ 0..1 Reference(Patient | Group | Device | Location) Reference to any subjects or other samples related to a subject
... encounter 0..1 Reference(Encounter) Context in which list created
... date Σ 0..1 dateTime When the list was prepared
... source Σ 0..1 Reference(Practitioner | PractitionerRole | Patient | Device) Who and/or what defined the list contents (aka Author)
... orderedBy 0..1 CodeableConcept What order the list has
Binding: ListOrderCodes (preferred): What order applies to the items in a list.

... note 0..* Annotation Comments about the list
... entry C 0..* BackboneElement Entries in the list
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... flag 0..1 CodeableConcept Status/Workflow information about this item
Binding: PatientMedicineChangeTypes (example): Codes that provide further information about the reason and meaning of the item in the list.

.... deleted ?!C 0..1 boolean If this item is actually marked as deleted
.... date 0..1 dateTime When item added to list
.... item 1..1 Reference(Resource) Actual entry
... emptyReason C 0..1 CodeableConcept Why list is empty
Binding: ListEmptyReasons (preferred): If a list is empty, why it is empty.


doco Documentation for this format

Terminology Bindings

PathConformanceValueSetURI
List.languagepreferredCommonLanguages
Additional Bindings Purpose
AllLanguages Max Binding
http://hl7.org/fhir/ValueSet/languages
from the FHIR Standard
List.statusrequiredListStatus
http://hl7.org/fhir/ValueSet/list-status|4.3.0
from the FHIR Standard
List.moderequiredListMode
http://hl7.org/fhir/ValueSet/list-mode|4.3.0
from the FHIR Standard
List.codeexampleExampleUseCodesForList
http://hl7.org/fhir/ValueSet/list-example-codes
from the FHIR Standard
List.orderedBypreferredListOrderCodes
http://hl7.org/fhir/ValueSet/list-order
from the FHIR Standard
List.entry.flagexamplePatientMedicineChangeTypes
http://hl7.org/fhir/ValueSet/list-item-flag
from the FHIR Standard
List.emptyReasonpreferredListEmptyReasons
http://hl7.org/fhir/ValueSet/list-empty-reason
from the FHIR Standard

Constraints

IdGradePath(s)DetailsRequirements
dom-2errorListIf the resource is contained in another resource, it SHALL NOT contain nested Resources
: contained.contained.empty()
dom-3errorListIf the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource
: contained.where(((id.exists() and ('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url)))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(uri) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4errorListIf a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated
: contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5errorListIf a resource is contained in another resource, it SHALL NOT have a security label
: contained.meta.security.empty()
dom-6best practiceListA resource should have narrative for robust management
: text.`div`.exists()
dom-r4bwarningList.containedContaining new R4B resources within R4 resources may cause interoperability issues if instances are shared with R4 systems
: ($this is Citation or $this is Evidence or $this is EvidenceReport or $this is EvidenceVariable or $this is MedicinalProductDefinition or $this is PackagedProductDefinition or $this is AdministrableProductDefinition or $this is Ingredient or $this is ClinicalUseDefinition or $this is RegulatedAuthorization or $this is SubstanceDefinition or $this is SubscriptionStatus or $this is SubscriptionTopic) implies (%resource is Citation or %resource is Evidence or %resource is EvidenceReport or %resource is EvidenceVariable or %resource is MedicinalProductDefinition or %resource is PackagedProductDefinition or %resource is AdministrableProductDefinition or %resource is Ingredient or %resource is ClinicalUseDefinition or %resource is RegulatedAuthorization or %resource is SubstanceDefinition or %resource is SubscriptionStatus or %resource is SubscriptionTopic)
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()
lst-1errorListA list can only have an emptyReason if it is empty
: emptyReason.empty() or entry.empty()
lst-2errorListThe deleted flag can only be used if the mode of the list is "changes"
: mode = 'changes' or entry.deleted.empty()
lst-3errorListAn entry date can only be used if the mode of the list is "working"
: mode = 'working' or entry.date.empty()

This structure is derived from List

Summary

 

Other representations of profile: CSV, Excel, Schematron