NCPI FHIR Implementation Guide v2
0.2.0 - ci-build

NCPI FHIR Implementation Guide v2 - Local Development build (v0.2.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: Example condition assertion using data from GREGoR - XML Representation

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<Observation xmlns="http://hl7.org/fhir">
  <id value="GSS123456-condition-assertion"/>
  <meta>
    <profile
             value="https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion"/>
  </meta>
  <text>
    <status value="extensions"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Observation GSS123456-condition-assertion</b></p><a name="GSS123456-condition-assertion"> </a><a name="hcGSS123456-condition-assertion"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-ncpi-participant-assertion.html">NCPI Participant Assertion</a></p></div><p><b>Part of Study</b>: <a href="ResearchStudy-research-study-gregor.html">ResearchStudy: identifier = AnVIL_GREGoR_GSS_U08_GRU; status = completed</a></p><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/condition-type Disease}">Disease</span></p><p><b>code</b>: <span title="Codes:{http://human-phenotype-ontology.org HP:0006951}">retrocerebellar cyst</span></p><p><b>subject</b>: <a href="Patient-GSS123456.html">Anonymous Patient (no stated gender), DoB Unknown ( https://anvil.terra.bio/#GSS123456)</a></p><p><b>value</b>: <span title="Codes:{https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/phenotypic-feature-assertion Present}">Present</span></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:">otherModifiers</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:">ageAtOnset</span></p><p><b>value</b>: 64 years<span style="background: LightGoldenRodYellow"> (Details: UCUM  codea = 'a')</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:">otherModifiers</span></p><p><b>value</b>: <span title="Codes:{http://human-phenotype-ontology.org HP:0012832}">HP:0012832</span></p></blockquote></div>
  </text>
  <extension
             url="https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/part-of-study">
    <valueReference>🔗 
      <reference value="ResearchStudy/research-study-gregor"/>
    </valueReference>
  </extension>
  <status value="final"/>
  <category>
    <coding>
      <system
              value="https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/condition-type"/>
      <code value="Disease"/>
    </coding>
  </category>
  <code>
    <coding>
      <system value="http://human-phenotype-ontology.org"/>
      <code value="HP:0006951"/>
    </coding>
    <text value="retrocerebellar cyst"/>
  </code>
  <subject>🔗 
    <reference value="Patient/GSS123456"/>
  </subject>
  <valueCodeableConcept>
    <coding>
      <system
              value="https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/phenotypic-feature-assertion"/>
      <code value="Present"/>
    </coding>
  </valueCodeableConcept>
  <component>
    <code>
      <coding>
        <code value="otherModifiers"/>
      </coding>
    </code>
  </component>
  <component>
    <code>
      <coding>
        <code value="ageAtOnset"/>
      </coding>
    </code>
    <valueQuantity>
      <value value="64"/>
      <unit value="years"/>
      <system value="http://unitsofmeasure.org"/>
      <code value="a"/>
    </valueQuantity>
  </component>
  <component>
    <code>
      <coding>
        <code value="otherModifiers"/>
      </coding>
    </code>
    <valueCodeableConcept>
      <coding>
        <system value="http://human-phenotype-ontology.org"/>
        <code value="HP:0012832"/>
      </coding>
    </valueCodeableConcept>
  </component>
</Observation>