NCPI FHIR Implementation Guide v2 - Local Development build (v0.2.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

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: Example condition assertion using data from GREGoR - JSON Representation

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{
  "resourceType" : "Observation",
  "id" : "GSS123456-condition-assertion",
  "meta" : {
    "profile" : [
      🔗 "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-participant-assertion"
    ]
  },
  "text" : {
    "status" : "extensions",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Observation GSS123456-condition-assertion</b></p><a name=\"GSS123456-condition-assertion\"> </a><a name=\"hcGSS123456-condition-assertion\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-ncpi-participant-assertion.html\">NCPI Participant Assertion</a></p></div><p><b>Part of Study</b>: <a href=\"ResearchStudy-research-study-gregor.html\">ResearchStudy: identifier = AnVIL_GREGoR_GSS_U08_GRU; status = completed</a></p><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/condition-type Disease}\">Disease</span></p><p><b>code</b>: <span title=\"Codes:{http://human-phenotype-ontology.org HP:0006951}\">retrocerebellar cyst</span></p><p><b>subject</b>: <a href=\"Patient-GSS123456.html\">Anonymous Patient (no stated gender), DoB Unknown ( https://anvil.terra.bio/#GSS123456)</a></p><p><b>value</b>: <span title=\"Codes:{https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/phenotypic-feature-assertion Present}\">Present</span></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">otherModifiers</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">ageAtOnset</span></p><p><b>value</b>: 64 years<span style=\"background: LightGoldenRodYellow\"> (Details: UCUM  codea = 'a')</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">otherModifiers</span></p><p><b>value</b>: <span title=\"Codes:{http://human-phenotype-ontology.org HP:0012832}\">HP:0012832</span></p></blockquote></div>"
  },
  "extension" : [
    {
      "url" : "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/part-of-study",
      "valueReference" : {
        🔗 "reference" : "ResearchStudy/research-study-gregor"
      }
    }
  ],
  "status" : "final",
  "category" : [
    {
      "coding" : [
        {
          "system" : "https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/condition-type",
          "code" : "Disease"
        }
      ]
    }
  ],
  "code" : {
    "coding" : [
      {
        "system" : "http://human-phenotype-ontology.org",
        "code" : "HP:0006951"
      }
    ],
    "text" : "retrocerebellar cyst"
  },
  "subject" : {
    🔗 "reference" : "Patient/GSS123456"
  },
  "valueCodeableConcept" : {
    "coding" : [
      {
        "system" : "https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/phenotypic-feature-assertion",
        "code" : "Present"
      }
    ]
  },
  "component" : [
    {
      "code" : {
        "coding" : [
          {
            "code" : "otherModifiers"
          }
        ]
      }
    },
    {
      "code" : {
        "coding" : [
          {
            "code" : "ageAtOnset"
          }
        ]
      },
      "valueQuantity" : {
        "value" : 64,
        "unit" : "years",
        "system" : "http://unitsofmeasure.org",
        "code" : "a"
      }
    },
    {
      "code" : {
        "coding" : [
          {
            "code" : "otherModifiers"
          }
        ]
      },
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "http://human-phenotype-ontology.org",
            "code" : "HP:0012832"
          }
        ]
      }
    }
  ]
}