NCPI FHIR Implementation Guide v2
0.1.0 - ci-build

NCPI FHIR Implementation Guide v2 - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: Example file metadata for a FASTQ file - TTL Representation

Raw ttl | Download


@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:Observation ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "FASTQ-example"] ; # 
  fhir:meta [
    ( fhir:profile [
fhir:v "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-fastq"^^xsd:anyURI ;
fhir:link <https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-fastq>     ] )
  ] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Observation FASTQ-example</b></p><a name=\"FASTQ-example\"> </a><a name=\"hcFASTQ-example\"> </a><a name=\"FASTQ-example-en-US\"> </a><p><b>status</b>: Final</p><p><b>code</b>: <span title=\"Codes:{http://edamontology.org format_1930}\">format_1930</span></p><p><b>focus</b>: <a href=\"DocumentReference-GF-6BAD9S7D.html\">DocumentReference: extension = V1,VCF,1044770380 bytes,; identifier = GF-6BAD9S7D; status = current; type = Variant calling; description = Annotated Variant Call</a></p><p><b>specimen</b>: <a href=\"Specimen-SA-000.html\">Specimen: identifier = SA_RV52EY7S; type = </a></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">AssayStrategy</span></p><p><b>value</b>: <span title=\"Codes:\">WGS</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">PlatformInstrument</span></p><p><b>value</b>: <span title=\"Codes:\">IlluminaHiSeq2000</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">LibraryPrep</span></p><p><b>value</b>: <span title=\"Codes:\">polyA</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">LibrarySelection</span></p><p><b>value</b>: <span title=\"Codes:\">PolyTEnrichment</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">Strandedness</span></p><p><b>value</b>: <span title=\"Codes:\">unstranded</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">IsPairedEnd</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">AdaptorTrimmed</span></p><p><b>value</b>: true</p></blockquote></div>"
  ] ; # 
  fhir:status [ fhir:v "final"] ; # 
  fhir:code [
    ( fhir:coding [
fhir:system [ fhir:v "http://edamontology.org"^^xsd:anyURI ] ;
fhir:code [ fhir:v "format_1930" ]     ] )
  ] ; # 
  fhir:focus ( [
fhir:reference [ fhir:v "DocumentReference/GF-6BAD9S7D" ]
  ] ) ; # 
  fhir:specimen [
fhir:reference [ fhir:v "Specimen/SA-000" ]
  ] ; # 
  fhir:component ( [
fhir:code [
      ( fhir:coding [
fhir:code [ fhir:v "AssayStrategy" ]       ] )     ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:code [ fhir:v "WGS" ]       ] )     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:code [ fhir:v "PlatformInstrument" ]       ] )     ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:code [ fhir:v "IlluminaHiSeq2000" ]       ] )     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:code [ fhir:v "LibraryPrep" ]       ] )     ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:code [ fhir:v "polyA" ]       ] )     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:code [ fhir:v "LibrarySelection" ]       ] )     ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:code [ fhir:v "PolyTEnrichment" ]       ] )     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:code [ fhir:v "Strandedness" ]       ] )     ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:code [ fhir:v "unstranded" ]       ] )     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:code [ fhir:v "IsPairedEnd" ]       ] )     ] ;
fhir:value [ fhir:v "false"^^xsd:boolean ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:code [ fhir:v "AdaptorTrimmed" ]       ] )     ] ;
fhir:value [ fhir:v "true"^^xsd:boolean ]
  ] ) . #