NCPI FHIR Implementation Guide v2
0.1.0 - ci-build

NCPI FHIR Implementation Guide v2 - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: Example file metadata for a FASTQ file - JSON Representation

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{
  "resourceType" : "Observation",
  "id" : "FASTQ-example",
  "meta" : {
    "profile" : [
      🔗 "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-fastq"
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Observation FASTQ-example</b></p><a name=\"FASTQ-example\"> </a><a name=\"hcFASTQ-example\"> </a><a name=\"FASTQ-example-en-US\"> </a><p><b>status</b>: Final</p><p><b>code</b>: <span title=\"Codes:{http://edamontology.org format_1930}\">format_1930</span></p><p><b>focus</b>: <a href=\"DocumentReference-GF-6BAD9S7D.html\">DocumentReference: extension = V1,VCF,1044770380 bytes,; identifier = GF-6BAD9S7D; status = current; type = Variant calling; description = Annotated Variant Call</a></p><p><b>specimen</b>: <a href=\"Specimen-SA-000.html\">Specimen: identifier = SA_RV52EY7S; type = </a></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">AssayStrategy</span></p><p><b>value</b>: <span title=\"Codes:\">WGS</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">PlatformInstrument</span></p><p><b>value</b>: <span title=\"Codes:\">IlluminaHiSeq2000</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">LibraryPrep</span></p><p><b>value</b>: <span title=\"Codes:\">polyA</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">LibrarySelection</span></p><p><b>value</b>: <span title=\"Codes:\">PolyTEnrichment</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">Strandedness</span></p><p><b>value</b>: <span title=\"Codes:\">unstranded</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">IsPairedEnd</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:\">AdaptorTrimmed</span></p><p><b>value</b>: true</p></blockquote></div>"
  },
  "status" : "final",
  "code" : {
    "coding" : [
      {
        "system" : "http://edamontology.org",
        "code" : "format_1930"
      }
    ]
  },
  "focus" : [
    {
      🔗 "reference" : "DocumentReference/GF-6BAD9S7D"
    }
  ],
  "specimen" : {
    🔗 "reference" : "Specimen/SA-000"
  },
  "component" : [
    {
      "code" : {
        "coding" : [
          {
            "code" : "AssayStrategy"
          }
        ]
      },
      "valueCodeableConcept" : {
        "coding" : [
          {
            "code" : "WGS"
          }
        ]
      }
    },
    {
      "code" : {
        "coding" : [
          {
            "code" : "PlatformInstrument"
          }
        ]
      },
      "valueCodeableConcept" : {
        "coding" : [
          {
            "code" : "IlluminaHiSeq2000"
          }
        ]
      }
    },
    {
      "code" : {
        "coding" : [
          {
            "code" : "LibraryPrep"
          }
        ]
      },
      "valueCodeableConcept" : {
        "coding" : [
          {
            "code" : "polyA"
          }
        ]
      }
    },
    {
      "code" : {
        "coding" : [
          {
            "code" : "LibrarySelection"
          }
        ]
      },
      "valueCodeableConcept" : {
        "coding" : [
          {
            "code" : "PolyTEnrichment"
          }
        ]
      }
    },
    {
      "code" : {
        "coding" : [
          {
            "code" : "Strandedness"
          }
        ]
      },
      "valueCodeableConcept" : {
        "coding" : [
          {
            "code" : "unstranded"
          }
        ]
      }
    },
    {
      "code" : {
        "coding" : [
          {
            "code" : "IsPairedEnd"
          }
        ]
      },
      "valueBoolean" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "code" : "AdaptorTrimmed"
          }
        ]
      },
      "valueBoolean" : true
    }
  ]
}