NCPI FHIR Implementation Guide v2
0.1.0 - ci-build

NCPI FHIR Implementation Guide v2 - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: Example file based on GREGoR - XML Representation

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<DocumentReference xmlns="http://hl7.org/fhir">
  <id value="GSS123456-01-010-SG-2"/>
  <meta>
    <profile
             value="https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-file"/>
  </meta>
  <text>
    <status value="extensions"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: DocumentReference GSS123456-01-010-SG-2</b></p><a name="GSS123456-01-010-SG-2"> </a><a name="hcGSS123456-01-010-SG-2"> </a><a name="GSS123456-01-010-SG-2-en-US"> </a><p><b>Version of the contents of the file</b>: V1</p><p><b>The file format used</b>: <span title="Codes:{http://edamontology.org format_2572}">BAM</span></p><p><b>The size of the file, e.g., in bytes.</b>: 1044770380 bytes</p><blockquote><p><b>Provides a list of hashes for confirming file transfers</b></p><ul><li>https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/hash-value: 9c2460c4647fdc57261f040042863fa0</li><li>https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/hash-type: md5</li></ul></blockquote><p><b>identifier</b>: GSS123456-01-010-SG-2</p><p><b>status</b>: Current</p><p><b>type</b>: <span title="Codes:{http://edamontology.org operation_3198}">Read mapping</span></p><p><b>subject</b>: <a href="Patient-GSS123456.html">Anonymous Patient (no stated gender), DoB Unknown ( https://anvil.terra.bio/#GSS123456)</a></p><p><b>description</b>: Aligned DNA short read</p><blockquote><p><b>content</b></p><p><b>If present, only those under the specific Access Policy can access the file in this location.</b>: <a href="Consent-kf-gru-dac-consent.html">Consent: extension = Use of the data is limited only by the terms of the model Data Use Certification.,https://redcap.chop.edu/surveys/?s=A7M873HMN8,Controlled; status = draft; scope = Research; category = Research Information Access; policyRule = Common Rule Informed Consent</a></p><h3>Attachments</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Url</b></td></tr><tr><td style="display: none">*</td><td>gs://fc-secure-a1f0e28d-c9d9-43bb-b4ba-5e0h81784fb1/GSS123456/SR_GS/GSS123456.bam</td></tr></table></blockquote></div>
  </text>
  <extension
             url="https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/content-version">
    <valueString value="V1"/>
  </extension>
  <extension
             url="https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/file-format">
    <valueCodeableConcept>
      <coding>
        <system value="http://edamontology.org"/>
        <code value="format_2572"/>
        <display value="BAM"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/file-size">
    <valueQuantity>
      <value value="1044770380"/>
      <unit value="bytes"/>
    </valueQuantity>
  </extension>
  <extension
             url="https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/hash-extension">
    <extension
               url="https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/hash-value">
      <valueString value="9c2460c4647fdc57261f040042863fa0"/>
    </extension>
    <extension
               url="https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/hash-type">
      <valueCode value="md5"/>
    </extension>
  </extension>
  <identifier>
    <value value="GSS123456-01-010-SG-2"/>
  </identifier>
  <status value="current"/>
  <type>
    <coding>
      <system value="http://edamontology.org"/>
      <code value="operation_3198"/>
      <display value="Read mapping"/>
    </coding>
  </type>
  <subject>🔗 
    <reference value="Patient/GSS123456"/>
  </subject>
  <description value="Aligned DNA short read"/>
  <content>
    <extension
               url="https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/location-access">
      <valueReference>🔗 
        <reference value="Consent/kf-gru-dac-consent"/>
      </valueReference>
    </extension>
    <attachment>
      <url
           value="gs://fc-secure-a1f0e28d-c9d9-43bb-b4ba-5e0h81784fb1/GSS123456/SR_GS/GSS123456.bam"/>
    </attachment>
  </content>
</DocumentReference>