NCPI FHIR Implementation Guide v2
0.1.0 - ci-build

NCPI FHIR Implementation Guide v2 - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: Example file based on GREGoR - JSON Representation

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{
  "resourceType" : "DocumentReference",
  "id" : "GSS123456-01-010-SG-2",
  "meta" : {
    "profile" : [
      🔗 "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/ncpi-file"
    ]
  },
  "text" : {
    "status" : "extensions",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: DocumentReference GSS123456-01-010-SG-2</b></p><a name=\"GSS123456-01-010-SG-2\"> </a><a name=\"hcGSS123456-01-010-SG-2\"> </a><a name=\"GSS123456-01-010-SG-2-en-US\"> </a><p><b>Version of the contents of the file</b>: V1</p><p><b>The file format used</b>: <span title=\"Codes:{http://edamontology.org format_2572}\">BAM</span></p><p><b>The size of the file, e.g., in bytes.</b>: 1044770380 bytes</p><blockquote><p><b>Provides a list of hashes for confirming file transfers</b></p><ul><li>https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/hash-value: 9c2460c4647fdc57261f040042863fa0</li><li>https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/hash-type: md5</li></ul></blockquote><p><b>identifier</b>: GSS123456-01-010-SG-2</p><p><b>status</b>: Current</p><p><b>type</b>: <span title=\"Codes:{http://edamontology.org operation_3198}\">Read mapping</span></p><p><b>subject</b>: <a href=\"Patient-GSS123456.html\">Anonymous Patient (no stated gender), DoB Unknown ( https://anvil.terra.bio/#GSS123456)</a></p><p><b>description</b>: Aligned DNA short read</p><blockquote><p><b>content</b></p><p><b>If present, only those under the specific Access Policy can access the file in this location.</b>: <a href=\"Consent-kf-gru-dac-consent.html\">Consent: extension = Use of the data is limited only by the terms of the model Data Use Certification.,https://redcap.chop.edu/surveys/?s=A7M873HMN8,Controlled; status = draft; scope = Research; category = Research Information Access; policyRule = Common Rule Informed Consent</a></p><h3>Attachments</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Url</b></td></tr><tr><td style=\"display: none\">*</td><td>gs://fc-secure-a1f0e28d-c9d9-43bb-b4ba-5e0h81784fb1/GSS123456/SR_GS/GSS123456.bam</td></tr></table></blockquote></div>"
  },
  "extension" : [
    {
      "url" : "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/content-version",
      "valueString" : "V1"
    },
    {
      "url" : "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/file-format",
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "http://edamontology.org",
            "code" : "format_2572",
            "display" : "BAM"
          }
        ]
      }
    },
    {
      "url" : "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/file-size",
      "valueQuantity" : {
        "value" : 1044770380,
        "unit" : "bytes"
      }
    },
    {
      "extension" : [
        {
          "url" : "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/hash-value",
          "valueString" : "9c2460c4647fdc57261f040042863fa0"
        },
        {
          "url" : "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/hash-type",
          "valueCode" : "md5"
        }
      ],
      "url" : "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/hash-extension"
    }
  ],
  "identifier" : [
    {
      "value" : "GSS123456-01-010-SG-2"
    }
  ],
  "status" : "current",
  "type" : {
    "coding" : [
      {
        "system" : "http://edamontology.org",
        "code" : "operation_3198",
        "display" : "Read mapping"
      }
    ]
  },
  "subject" : {
    🔗 "reference" : "Patient/GSS123456"
  },
  "description" : "Aligned DNA short read",
  "content" : [
    {
      "extension" : [
        {
          "url" : "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/location-access",
          "valueReference" : {
            🔗 "reference" : "Consent/kf-gru-dac-consent"
          }
        }
      ],
      "attachment" : {
        "url" : "gs://fc-secure-a1f0e28d-c9d9-43bb-b4ba-5e0h81784fb1/GSS123456/SR_GS/GSS123456.bam"
      }
    }
  ]
}