NCPI FHIR Implementation Guide - Local Development build (v0.2.0). See the Directory of published versions

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: Baylor Hopkins Center for Mendelian Genomics (BH CMG) - XML Representation

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<Observation xmlns="http://hl7.org/fhir">
  <id value="anvil-summary-phs000711"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative: Observation</b><a name="anvil-summary-phs000711"> </a></p><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">Resource Observation &quot;anvil-summary-phs000711&quot; </p></div><p><b>status</b>: final</p><p><b>code</b>: Variable Summary <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="CodeSystem-ncpi.html">NCPI FHIR Codes</a>#Summary)</span></p><p><b>focus</b>: <a href="ResearchStudy-research-study-phs000711.html">ResearchStudy/research-study-phs000711</a></p><blockquote><p><b>component</b></p><p><b>code</b>: Number of Samples <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="CodeSystem-ncpi.html">NCPI FHIR Codes</a>#SampleCount)</span></p><p><b>value</b>: 807</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Number of Participants <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="CodeSystem-ncpi.html">NCPI FHIR Codes</a>#Participant)</span></p><p><b>value</b>: 807</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Consent Codes <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> ([not stated]#ConsentCodes)</span></p><p><b>value</b>: HMB-IRB-NPU</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Terra Workspace Name <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> ([not stated]#TerraWorkspace)</span></p><p><b>value</b>: AnVIL_CMG_BaylorHopkins_HMB-NPU_WES</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Primary Disease <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> ([not stated]#PrimaryDisease)</span></p><p><b>value</b>: Mendelian</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Access Type <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> ([not stated]#AccessType)</span></p><p><b>value</b>: Controlled Access</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: StudyDesign <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> ([not stated]#StudyDesign)</span></p><p><b>value</b>: Mendelian</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: DataType <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> ([not stated]#DataType)</span></p><p><b>value</b>: Exome</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Size on Disk <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> ([not stated]#StorageSize)</span></p><p><b>value</b>: 4.87 TR<span style="background: LightGoldenRodYellow"> (Details: UCUM code TR = 'TR')</span></p></blockquote></div>
  </text>
  <status value="final"/>
  <code>
    <coding>
      <system
              value="https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi"/>
      <code value="Summary"/>
      <display value="Variable Summary"/>
    </coding>
  </code>
  <focus>
    <reference value="ResearchStudy/research-study-phs000711"/>
  </focus>
  <component>
    <code>
      <coding>
        <system
                value="https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi"/>
        <code value="SampleCount"/>
        <display value="Number of Samples"/>
      </coding>
    </code>
    <valueInteger value="807"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi"/>
        <code value="Participant"/>
        <display value="Number of Participants"/>
      </coding>
    </code>
    <valueInteger value="807"/>
  </component>
  <component>
    <code>
      <coding>
        <code value="ConsentCodes"/>
        <display value="Consent Codes"/>
      </coding>
    </code>
    <valueString value="HMB-IRB-NPU"/>
  </component>
  <component>
    <code>
      <coding>
        <code value="TerraWorkspace"/>
        <display value="Terra Workspace Name"/>
      </coding>
    </code>
    <valueString value="AnVIL_CMG_BaylorHopkins_HMB-NPU_WES"/>
  </component>
  <component>
    <code>
      <coding>
        <code value="PrimaryDisease"/>
        <display value="Primary Disease"/>
      </coding>
    </code>
    <valueString value="Mendelian"/>
  </component>
  <component>
    <code>
      <coding>
        <code value="AccessType"/>
        <display value="Access Type"/>
      </coding>
    </code>
    <valueString value="Controlled Access"/>
  </component>
  <component>
    <code>
      <coding>
        <code value="StudyDesign"/>
      </coding>
    </code>
    <valueString value="Mendelian"/>
  </component>
  <component>
    <code>
      <coding>
        <code value="DataType"/>
      </coding>
    </code>
    <valueString value="Exome"/>
  </component>
  <component>
    <code>
      <coding>
        <code value="StorageSize"/>
        <display value="Size on Disk"/>
      </coding>
    </code>
    <valueQuantity>
      <value value="4.87"/>
      <system value="http://unitsofmeasure.org"/>
      <code value="TR"/>
    </valueQuantity>
  </component>
</Observation>