NCPI FHIR Implementation Guide - Local Development build (v0.2.0). See the Directory of published versions

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: Baylor Hopkins Center for Mendelian Genomics (BH CMG) - JSON Representation

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{
  "resourceType" : "Observation",
  "id" : "anvil-summary-phs000711",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Observation</b><a name=\"anvil-summary-phs000711\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Observation &quot;anvil-summary-phs000711&quot; </p></div><p><b>status</b>: final</p><p><b>code</b>: Variable Summary <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"CodeSystem-ncpi.html\">NCPI FHIR Codes</a>#Summary)</span></p><p><b>focus</b>: <a href=\"ResearchStudy-research-study-phs000711.html\">ResearchStudy/research-study-phs000711</a></p><blockquote><p><b>component</b></p><p><b>code</b>: Number of Samples <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"CodeSystem-ncpi.html\">NCPI FHIR Codes</a>#SampleCount)</span></p><p><b>value</b>: 807</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Number of Participants <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"CodeSystem-ncpi.html\">NCPI FHIR Codes</a>#Participant)</span></p><p><b>value</b>: 807</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Consent Codes <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ([not stated]#ConsentCodes)</span></p><p><b>value</b>: HMB-IRB-NPU</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Terra Workspace Name <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ([not stated]#TerraWorkspace)</span></p><p><b>value</b>: AnVIL_CMG_BaylorHopkins_HMB-NPU_WES</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Primary Disease <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ([not stated]#PrimaryDisease)</span></p><p><b>value</b>: Mendelian</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Access Type <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ([not stated]#AccessType)</span></p><p><b>value</b>: Controlled Access</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: StudyDesign <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ([not stated]#StudyDesign)</span></p><p><b>value</b>: Mendelian</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: DataType <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ([not stated]#DataType)</span></p><p><b>value</b>: Exome</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Size on Disk <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ([not stated]#StorageSize)</span></p><p><b>value</b>: 4.87 TR<span style=\"background: LightGoldenRodYellow\"> (Details: UCUM code TR = 'TR')</span></p></blockquote></div>"
  },
  "status" : "final",
  "code" : {
    "coding" : [
      {
        "system" : "https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi",
        "code" : "Summary",
        "display" : "Variable Summary"
      }
    ]
  },
  "focus" : [
    {
      "reference" : "ResearchStudy/research-study-phs000711"
    }
  ],
  "component" : [
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi",
            "code" : "SampleCount",
            "display" : "Number of Samples"
          }
        ]
      },
      "valueInteger" : 807
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi",
            "code" : "Participant",
            "display" : "Number of Participants"
          }
        ]
      },
      "valueInteger" : 807
    },
    {
      "code" : {
        "coding" : [
          {
            "code" : "ConsentCodes",
            "display" : "Consent Codes"
          }
        ]
      },
      "valueString" : "HMB-IRB-NPU"
    },
    {
      "code" : {
        "coding" : [
          {
            "code" : "TerraWorkspace",
            "display" : "Terra Workspace Name"
          }
        ]
      },
      "valueString" : "AnVIL_CMG_BaylorHopkins_HMB-NPU_WES"
    },
    {
      "code" : {
        "coding" : [
          {
            "code" : "PrimaryDisease",
            "display" : "Primary Disease"
          }
        ]
      },
      "valueString" : "Mendelian"
    },
    {
      "code" : {
        "coding" : [
          {
            "code" : "AccessType",
            "display" : "Access Type"
          }
        ]
      },
      "valueString" : "Controlled Access"
    },
    {
      "code" : {
        "coding" : [
          {
            "code" : "StudyDesign"
          }
        ]
      },
      "valueString" : "Mendelian"
    },
    {
      "code" : {
        "coding" : [
          {
            "code" : "DataType"
          }
        ]
      },
      "valueString" : "Exome"
    },
    {
      "code" : {
        "coding" : [
          {
            "code" : "StorageSize",
            "display" : "Size on Disk"
          }
        ]
      },
      "valueQuantity" : {
        "value" : 4.87,
        "system" : "http://unitsofmeasure.org",
        "code" : "TR"
      }
    }
  ]
}