NCPI FHIR Implementation Guide v2
0.1.0 - ci-build
NCPI FHIR Implementation Guide v2 - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
| Draft as of 2024-11-25 |
Definitions for the SharedDataModelFileMetadata logical model.
Guidance on how to interpret the contents of this table can be found here
| 0. SharedDataModelFileMetadata | |
| Definition | The Shared Data Model for File Metadata |
| Short | Shared data model for File Metadata |
| Logical Model | Instances of this logical model are not marked to be the target of a Reference |
| 2. SharedDataModelFileMetadata.parentFile | |
| Definition | The file which this metadata refers to |
| Short | The file which this metadata refers to |
| Control | 1..1 |
| Type | Reference |
| 4. SharedDataModelFileMetadata.assayStrategy | |
| Definition | Assay strategy employed for this file |
| Short | Assay strategy employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 6. SharedDataModelFileMetadata.platformInstrument | |
| Definition | The platform instrument employed for this file |
| Short | The platform instrument employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 8. SharedDataModelFileMetadata.relatedSamples | |
| Definition | Any samples (biospecimen) related to the file |
| Short | Any samples (biospecimen) related to the file |
| Control | 0..* |
| Type | Reference |
| 10. SharedDataModelFileMetadata.libraryPrep | |
| Definition | The library preparation employed for this file |
| Short | The library preparation employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 12. SharedDataModelFileMetadata.librarySelection | |
| Definition | The library selection employed for this file |
| Short | The library selection employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 14. SharedDataModelFileMetadata.strandedness | |
| Definition | The strandedness of the file |
| Short | The strandedness of the file |
| Control | 0..1 |
| Type | CodeableConcept |
| 16. SharedDataModelFileMetadata.targetRegion | |
| Definition | The target region employed for this file |
| Short | The target region employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 18. SharedDataModelFileMetadata.referenceGenome | |
| Definition | The reference genome employed for this file |
| Short | The reference genome employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 20. SharedDataModelFileMetadata.isPairedEnd | |
| Definition | Does this file represent paired end data? |
| Short | Does this file represent paired end data? |
| Control | 0..1 |
| Type | boolean |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 22. SharedDataModelFileMetadata.workflowType | |
| Definition | The workflow type employed for this file |
| Short | The workflow type employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 24. SharedDataModelFileMetadata.workflowTool | |
| Definition | The workflow tool employed for this file |
| Short | The workflow tool employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 26. SharedDataModelFileMetadata.adaptorTrimmed | |
| Definition | Does this file indicate that an adaptor is trimmed? |
| Short | Does this file indicate that an adaptor is trimmed? |
| Control | 0..1 |
| Type | boolean |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
Guidance on how to interpret the contents of this table can be found here
| 0. SharedDataModelFileMetadata | |
| Definition | The Shared Data Model for File Metadata |
| Short | Shared data model for File Metadata |
| Control | 0..* |
| Is Modifier | false |
| Logical Model | Instances of this logical model are not marked to be the target of a Reference |
| 2. SharedDataModelFileMetadata.parentFile | |
| Definition | The file which this metadata refers to |
| Short | The file which this metadata refers to |
| Control | 1..1 |
| Type | Reference |
| 4. SharedDataModelFileMetadata.assayStrategy | |
| Definition | Assay strategy employed for this file |
| Short | Assay strategy employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 6. SharedDataModelFileMetadata.platformInstrument | |
| Definition | The platform instrument employed for this file |
| Short | The platform instrument employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 8. SharedDataModelFileMetadata.relatedSamples | |
| Definition | Any samples (biospecimen) related to the file |
| Short | Any samples (biospecimen) related to the file |
| Control | 0..* |
| Type | Reference |
| 10. SharedDataModelFileMetadata.libraryPrep | |
| Definition | The library preparation employed for this file |
| Short | The library preparation employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 12. SharedDataModelFileMetadata.librarySelection | |
| Definition | The library selection employed for this file |
| Short | The library selection employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 14. SharedDataModelFileMetadata.strandedness | |
| Definition | The strandedness of the file |
| Short | The strandedness of the file |
| Control | 0..1 |
| Type | CodeableConcept |
| 16. SharedDataModelFileMetadata.targetRegion | |
| Definition | The target region employed for this file |
| Short | The target region employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 18. SharedDataModelFileMetadata.referenceGenome | |
| Definition | The reference genome employed for this file |
| Short | The reference genome employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 20. SharedDataModelFileMetadata.isPairedEnd | |
| Definition | Does this file represent paired end data? |
| Short | Does this file represent paired end data? |
| Control | 0..1 |
| Type | boolean |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 22. SharedDataModelFileMetadata.workflowType | |
| Definition | The workflow type employed for this file |
| Short | The workflow type employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 24. SharedDataModelFileMetadata.workflowTool | |
| Definition | The workflow tool employed for this file |
| Short | The workflow tool employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 26. SharedDataModelFileMetadata.adaptorTrimmed | |
| Definition | Does this file indicate that an adaptor is trimmed? |
| Short | Does this file indicate that an adaptor is trimmed? |
| Control | 0..1 |
| Type | boolean |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
Guidance on how to interpret the contents of this table can be found here
| 0. SharedDataModelFileMetadata | |
| Definition | The Shared Data Model for File Metadata |
| Short | Shared data model for File Metadata |
| Control | 0..* |
| Is Modifier | false |
| Logical Model | Instances of this logical model are not marked to be the target of a Reference |
| 2. SharedDataModelFileMetadata.parentFile | |
| Definition | The file which this metadata refers to |
| Short | The file which this metadata refers to |
| Control | 1..1 |
| Type | Reference |
| 4. SharedDataModelFileMetadata.assayStrategy | |
| Definition | Assay strategy employed for this file |
| Short | Assay strategy employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 6. SharedDataModelFileMetadata.platformInstrument | |
| Definition | The platform instrument employed for this file |
| Short | The platform instrument employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 8. SharedDataModelFileMetadata.relatedSamples | |
| Definition | Any samples (biospecimen) related to the file |
| Short | Any samples (biospecimen) related to the file |
| Control | 0..* |
| Type | Reference |
| 10. SharedDataModelFileMetadata.libraryPrep | |
| Definition | The library preparation employed for this file |
| Short | The library preparation employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 12. SharedDataModelFileMetadata.librarySelection | |
| Definition | The library selection employed for this file |
| Short | The library selection employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 14. SharedDataModelFileMetadata.strandedness | |
| Definition | The strandedness of the file |
| Short | The strandedness of the file |
| Control | 0..1 |
| Type | CodeableConcept |
| 16. SharedDataModelFileMetadata.targetRegion | |
| Definition | The target region employed for this file |
| Short | The target region employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 18. SharedDataModelFileMetadata.referenceGenome | |
| Definition | The reference genome employed for this file |
| Short | The reference genome employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 20. SharedDataModelFileMetadata.isPairedEnd | |
| Definition | Does this file represent paired end data? |
| Short | Does this file represent paired end data? |
| Control | 0..1 |
| Type | boolean |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 22. SharedDataModelFileMetadata.workflowType | |
| Definition | The workflow type employed for this file |
| Short | The workflow type employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 24. SharedDataModelFileMetadata.workflowTool | |
| Definition | The workflow tool employed for this file |
| Short | The workflow tool employed for this file |
| Control | 0..1 |
| Type | CodeableConcept |
| 26. SharedDataModelFileMetadata.adaptorTrimmed | |
| Definition | Does this file indicate that an adaptor is trimmed? |
| Short | Does this file indicate that an adaptor is trimmed? |
| Control | 0..1 |
| Type | boolean |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |