NCPI FHIR Implementation Guide v2
0.1.0 - ci-build

NCPI FHIR Implementation Guide v2 - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

Example Observation: Example file metadata for a BAM-CRAM file from GREGoR

Generated Narrative: Observation gregor-example-metadata

status: Final

code: format_2572

focus: Anonymous Patient (no stated gender), DoB Unknown ( https://anvil.terra.bio/#GSS123456)

specimen: Specimen: identifier = GSS123456-s1; type =

component

code: AssayStrategy

value: WGS

component

code: PlatformInstrument

value: IlluminaHiSeq2000

component

code: LibraryPrep

value: polyA

component

code: LibrarySelection

value: PolyTEnrichment

component

code: TargetRegion

value: Not Applicable

component

code: Strandedness

value: stranded

component

code: ReferenceGenome

value: GRCh38

component

code: IsPairedEnd

value: false

component

code: WorkflowTool

value: bammem

component

code: WorkflowType

value: alignment